GeneVis: simulation and visualization of genetic networks

Interactive Visualization of Gene Regulatory Networks with Associated Gene Expression Time Series Data

We present GENeVis, an application to visualize gene expression time series data in a gene regulatory network context. This is a network of regulator proteins that regulate the expression of their respective target genes. The networks are represented as graphs, in which the nodes represent genes, and the edges represent interactions between a gene and its targets. GENeVis adds features that are...

Modeling and Multi-Objective Optimization of Stall Control on NACA0015 Airfoil with a Synthetic Jet using GMDH Type Neural Networks and Genetic Algorithms

This study concerns numerical simulation, modeling and optimization of aerodynamic stall control using a synthetic jet actuator. Thenumerical simulation was carried out by a large-eddy simulation that employs a RNG-based model as the subgrid-scale model. The flow around a NACA0015 airfoil, including a synthetic jet located at 10 % of the chord, is studied under Reynolds number Re = 12.7 × 106 a...

Kinetic Mechanism Reduction Using Genetic Algorithms, Case Study on H2/O2 Reaction

For large and complex reacting systems, computational efficiency becomes a critical issue in process simulation, optimization and model-based control. Mechanism simplification is often a necessity to improve computational speed. We present a novel approach to simplification of reaction networks that formulates the model reduction problem as an optimization problem and solves it using geneti...

Cooperative Co-Evolving Neural Networks for Robosoccer Simulation

FDMG: Fault detection method by using genetic algorithm in clustered wireless sensor networks

Wireless sensor networks (WSNs) consist of a large number of sensor nodes which are capable of sensing different environmental phenomena and sending the collected data to the base station or Sink. Since sensor nodes are made of cheap components and are deployed in remote and uncontrolled environments, they are prone to failure; thus, maintaining a network with its proper functions even when und...